species:   Rhsol
pid:       PID0472
parent:    Rhi-milR-109
paralog:   
locus:     KB317801.1:21476-21549
matures:   ['UAGUAGCUGUUCUCUUAGGGGC', 'GCCUGGCCAGAGGGGAGUAAUGGAA']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317801.1:21476-21549

14 out of bounds
10 alignments
8 proper strand
4 stranded perfect matches

         ****************************  *************************          
UUGACCAGGGUGCCUGGCCAGAGGGGAGUAAUGGAAUUCUUUUAGUAGCUGUUCUCUUAGGGGCUCAUUGUCCA
..(((..((((.((((...((((((.(((.((.(((....))).)).))).)))))))))).))))...)))..
------------------------------------------UAGUAGCUGUUCUCUUAGGGGC---------- l=22 a=0 c
-----------GCCUGGCCAGAGGGGAGUAAUGGAA-------------------------------------- l=25 a=0 c*
-----------------------------------------UUAGUAGCUGUUCUCUUAGGGGC---------- l=23 a=2 ma
-----------GCCUGGCCAGAGGGGAGUAAUGGAAU------------------------------------- l=26 a=0 ma*

--------------------------------------------GUAGCUGUUCUCcUAGGGGCU--------- l=21 a=1 
------------------------------------------UAGUAGCUGUUCUCcUAGGGGC---------- l=22 a=1 
-----------------------------------------UUAGUAGCUGUUCUCUUAGGGGC---------- l=23 a=2 (ma)
----------------------------------------UUUAGUAGCUGUUCUCUUAGGGG----------- l=23 a=1 
----------------------------------------cUUAGUAGCUGUUCUCUUAGGGGC---------- l=24 a=1 
----------------------------------------UUUAGUAGCUGUUCUCUUAGGGGC---------- l=24 a=1 
-----CAGGGUGCCUGGCCAGAGGGGAuU--------------------------------------------- l=24 a=1 

mb-01011
ax-1001011
ku-01
ss-111110101100
fn-001
